J3_4V6O_028

3D structure

PDB id

4V6O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (class 4a of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

14.7 Å

Loop

Sequence

GGCCUAAC*GGGGAAUAU*AGCC

Length

21 nucleotides

Bulged bases

4V6O|1|AA|C|48, 4V6O|1|AA|A|51

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V6O|1|AA|G|45
4V6O|1|AA|G|46
4V6O|1|AA|C|47
4V6O|1|AA|C|48
4V6O|1|AA|U|49
4V6O|1|AA|A|50
4V6O|1|AA|A|51
4V6O|1|AA|C|52
*
4V6O|1|AA|G|359
4V6O|1|AA|G|360
4V6O|1|AA|G|361
4V6O|1|AA|G|362
4V6O|1|AA|A|363
4V6O|1|AA|A|364
4V6O|1|AA|U|365
4V6O|1|AA|A|366
4V6O|1|AA|U|367
*
4V6O|1|AA|A|393
4V6O|1|AA|G|394
4V6O|1|AA|C|395
4V6O|1|AA|C|396

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AO

30S ribosomal protein S12

Chain AS

30S ribosomal protein S16