J3_4V6O_038

3D structure

PDB id

4V6O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (class 4a of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

14.7 Å

Loop

Sequence

AGGAUGUUG*CAUCAUUUAAAG*CACU

Length

25 nucleotides

Bulged bases

4V6O|1|BB|U|1061, 4V6O|1|BB|U|1078, 4V6O|1|BB|A|1084

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V6O|1|BB|A|1054
4V6O|1|BB|G|1055
4V6O|1|BB|G|1056
4V6O|1|BB|A|1057
4V6O|1|BB|U|1058
4V6O|1|BB|G|1059
4V6O|1|BB|U|1060
4V6O|1|BB|U|1061
4V6O|1|BB|G|1062
*
4V6O|1|BB|C|1076
4V6O|1|BB|A|1077
4V6O|1|BB|U|1078
4V6O|1|BB|C|1079
4V6O|1|BB|A|1080
4V6O|1|BB|U|1081
4V6O|1|BB|U|1082
4V6O|1|BB|U|1083
4V6O|1|BB|A|1084
4V6O|1|BB|A|1085
4V6O|1|BB|A|1086
4V6O|1|BB|G|1087
*
4V6O|1|BB|C|1102
4V6O|1|BB|A|1103
4V6O|1|BB|C|1104
4V6O|1|BB|U|1105

Current chains

Chain BB

23S ribomosomal RNA

Nearby chains

Chain B7

50S ribosomal protein L36

Chain BH

50S ribosomal protein L6

Chain BJ

50S ribosomal protein L10

Chain BK

50S ribosomal protein L11