J3_4V6P_005

3D structure

PDB id

4V6P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (class 4b of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

13.5 Å

Loop

Sequence

GGUGGA*UAC*GGAAUC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V6P|1|AA|G|941
4V6P|1|AA|G|942
4V6P|1|AA|U|943
4V6P|1|AA|G|944
4V6P|1|AA|G|945
4V6P|1|AA|A|946
*
4V6P|1|AA|U|1235
4V6P|1|AA|A|1236
4V6P|1|AA|C|1237
*
4V6P|1|AA|G|1337
4V6P|1|AA|G|1338
4V6P|1|AA|A|1339
4V6P|1|AA|A|1340
4V6P|1|AA|U|1341
4V6P|1|AA|C|1342

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AD

Transfer RNA; tRNA

Chain AJ

30S ribosomal protein S7

Chain AL

30S ribosomal protein S9

Chain AM

30S ribosomal protein S10

Chain AP

30S ribosomal protein S13