J3_4V6P_019

3D structure

PDB id

4V6P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (class 4b of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

13.5 Å

Loop

Sequence

CGGAAG*CAGG*CCAAG

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V6P|1|BB|C|1298
4V6P|1|BB|G|1299
4V6P|1|BB|G|1300
4V6P|1|BB|A|1301
4V6P|1|BB|A|1302
4V6P|1|BB|G|1303
*
4V6P|1|BB|C|1625
4V6P|1|BB|A|1626
4V6P|1|BB|G|1627
4V6P|1|BB|G|1628
*
4V6P|1|BB|C|1638
4V6P|1|BB|C|1639
4V6P|1|BB|A|1640
4V6P|1|BB|A|1641
4V6P|1|BB|G|1642

Current chains

Chain BB

23S ribomosomal RNA

Nearby chains