J3_4V6P_022

3D structure

PDB id

4V6P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (class 4b of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

13.5 Å

Loop

Sequence

CUAAU*AGGUUAGU*GCAUAAG

Length

20 nucleotides

Bulged bases

4V6P|1|BB|U|2334

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V6P|1|BB|C|2295
4V6P|1|BB|U|2296
4V6P|1|BB|A|2297
4V6P|1|BB|A|2298
4V6P|1|BB|U|2299
*
4V6P|1|BB|A|2317
4V6P|1|BB|G|2318
4V6P|1|BB|G|2319
4V6P|1|BB|U|2320
4V6P|1|BB|U|2321
4V6P|1|BB|A|2322
4V6P|1|BB|G|2323
4V6P|1|BB|U|2324
*
4V6P|1|BB|G|2331
4V6P|1|BB|C|2332
4V6P|1|BB|A|2333
4V6P|1|BB|U|2334
4V6P|1|BB|A|2335
4V6P|1|BB|A|2336
4V6P|1|BB|G|2337

Current chains

Chain BB

23S ribomosomal RNA

Nearby chains

Chain BA

5S ribosomal RNA; 5S rRNA

Chain BG

50S ribosomal protein L5

Chain BQ

50S ribosomal protein L18

Chain BY

50S ribosomal protein L27