J3_4V6Q_012

3D structure

PDB id

4V6Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (class 5 of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

11.5 Å

Loop

Sequence

CAAUGG*UCGUAGUCC*GUCG

Length

19 nucleotides

Bulged bases

4V6Q|1|AA|U|1240

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V6Q|1|AA|C|1237
4V6Q|1|AA|A|1238
4V6Q|1|AA|A|1239
4V6Q|1|AA|U|1240
4V6Q|1|AA|G|1241
4V6Q|1|AA|G|1242
*
4V6Q|1|AA|U|1295
4V6Q|1|AA|C|1296
4V6Q|1|AA|G|1297
4V6Q|1|AA|U|1298
4V6Q|1|AA|A|1299
4V6Q|1|AA|G|1300
4V6Q|1|AA|U|1301
4V6Q|1|AA|C|1302
4V6Q|1|AA|C|1303
*
4V6Q|1|AA|G|1334
4V6Q|1|AA|U|1335
4V6Q|1|AA|C|1336
4V6Q|1|AA|G|1337

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AJ

30S ribosomal protein S7

Chain AP

30S ribosomal protein S13