3D structure

PDB id
4V6Q (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structural characterization of mRNA-tRNA translocation intermediates (class 5 of the six classes)
Experimental method
ELECTRON MICROSCOPY
Resolution
11.5 Å

Loop

Sequence
CAUCC*GGUA*UUUAAAG
Length
16 nucleotides
Bulged bases
4V6Q|1|BB|A|2518
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

4V6Q|1|BB|C|2517
4V6Q|1|BB|A|2518
4V6Q|1|BB|U|2519
4V6Q|1|BB|C|2520
4V6Q|1|BB|C|2521
*
4V6Q|1|BB|G|2544
4V6Q|1|BB|G|2545
4V6Q|1|BB|U|2546
4V6Q|1|BB|A|2547
*
4V6Q|1|BB|U|2561
4V6Q|1|BB|U|2562
4V6Q|1|BB|U|2563
4V6Q|1|BB|A|2564
4V6Q|1|BB|A|2565
4V6Q|1|BB|A|2566
4V6Q|1|BB|G|2567

Current chains

Chain BB
23S ribomosomal RNA

Nearby chains

Chain BL
50S ribosomal protein L13
Chain BM
50S ribosomal protein L14

Coloring options:

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