J3_4V6Q_040

3D structure

PDB id

4V6Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (class 5 of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

11.5 Å

Loop

Sequence

CCU*GAUAGUGAACCAGUAC*GGAAAG

Length

25 nucleotides

Bulged bases

4V6Q|1|BB|U|448, 4V6Q|1|BB|C|456, 4V6Q|1|BB|A|472

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V6Q|1|BB|C|32
4V6Q|1|BB|C|33
4V6Q|1|BB|U|34
*
4V6Q|1|BB|G|446
4V6Q|1|BB|A|447
4V6Q|1|BB|U|448
4V6Q|1|BB|A|449
4V6Q|1|BB|G|450
4V6Q|1|BB|U|451
4V6Q|1|BB|G|452
4V6Q|1|BB|A|453
4V6Q|1|BB|A|454
4V6Q|1|BB|C|455
4V6Q|1|BB|C|456
4V6Q|1|BB|A|457
4V6Q|1|BB|G|458
4V6Q|1|BB|U|459
4V6Q|1|BB|A|460
4V6Q|1|BB|C|461
*
4V6Q|1|BB|G|468
4V6Q|1|BB|G|469
4V6Q|1|BB|A|470
4V6Q|1|BB|A|471
4V6Q|1|BB|A|472
4V6Q|1|BB|G|473

Current chains

Chain BB

23S ribomosomal RNA

Nearby chains

Chain B5

50S ribosomal protein L34

Chain BF

50S ribosomal protein L4

Chain BS

50S ribosomal protein L20

Chain BV

50S ribosomal protein L23