3D structure

PDB id
4V6R (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structural characterization of mRNA-tRNA translocation intermediates (class 6 of the six classes)
Experimental method
ELECTRON MICROSCOPY
Resolution
11.5 Å

Loop

Sequence
UUUAAUUC*GAAGAACCUUAC*GGCUA
Length
25 nucleotides
Bulged bases
4V6R|1|AA|A|975, 4V6R|1|AA|G|976
QA status
Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_4V6R_006 not in the Motif Atlas
Homologous match to J3_4LFB_004
Geometric discrepancy: 0.4343
The information below is about J3_4LFB_004
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_88451.1
Basepair signature
cWW-tWW-F-F-F-F-F-tSS-cWW-F-F-cWW-F-F-F-F-F-F
Number of instances in this motif group
5

Unit IDs

4V6R|1|AA|U|955
4V6R|1|AA|U|956
4V6R|1|AA|U|957
4V6R|1|AA|A|958
4V6R|1|AA|A|959
4V6R|1|AA|U|960
4V6R|1|AA|U|961
4V6R|1|AA|C|962
*
4V6R|1|AA|G|973
4V6R|1|AA|A|974
4V6R|1|AA|A|975
4V6R|1|AA|G|976
4V6R|1|AA|A|977
4V6R|1|AA|A|978
4V6R|1|AA|C|979
4V6R|1|AA|C|980
4V6R|1|AA|U|981
4V6R|1|AA|U|982
4V6R|1|AA|A|983
4V6R|1|AA|C|984
*
4V6R|1|AA|G|1221
4V6R|1|AA|G|1222
4V6R|1|AA|C|1223
4V6R|1|AA|U|1224
4V6R|1|AA|A|1225

Current chains

Chain AA
16S ribosomal RNA

Nearby chains

Chain AB
Transfer RNA; tRNA
Chain AM
30S ribosomal protein S10
Chain AP
30S ribosomal protein S13
Chain AQ
30S ribosomal protein S14
Chain AV
30S ribosomal protein S19

Coloring options:


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