3D structure

PDB id
4V6R (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structural characterization of mRNA-tRNA translocation intermediates (class 6 of the six classes)
Experimental method
ELECTRON MICROSCOPY
Resolution
11.5 Å

Loop

Sequence
CAAUGG*UCGUAGUCC*GUCG
Length
19 nucleotides
Bulged bases
4V6R|1|AA|U|1240
QA status
Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

4V6R|1|AA|C|1237
4V6R|1|AA|A|1238
4V6R|1|AA|A|1239
4V6R|1|AA|U|1240
4V6R|1|AA|G|1241
4V6R|1|AA|G|1242
*
4V6R|1|AA|U|1295
4V6R|1|AA|C|1296
4V6R|1|AA|G|1297
4V6R|1|AA|U|1298
4V6R|1|AA|A|1299
4V6R|1|AA|G|1300
4V6R|1|AA|U|1301
4V6R|1|AA|C|1302
4V6R|1|AA|C|1303
*
4V6R|1|AA|G|1334
4V6R|1|AA|U|1335
4V6R|1|AA|C|1336
4V6R|1|AA|G|1337

Current chains

Chain AA
16S ribosomal RNA

Nearby chains

Chain AD
Transfer RNA; tRNA
Chain AJ
30S ribosomal protein S7
Chain AP
30S ribosomal protein S13

Coloring options:

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