J3_4V6R_016

3D structure

PDB id

4V6R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (class 6 of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

11.5 Å

Loop

Sequence

UGAUCUA*UGG*CAAA

Length

14 nucleotides

Bulged bases

4V6R|1|BB|U|686, 4V6R|1|BB|A|792

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V6R_016 not in the Motif Atlas

Homologous match to J3_5J7L_038

Geometric discrepancy: 0.2237

The information below is about J3_5J7L_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_64189.2

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

4V6R|1|BB|U|683
4V6R|1|BB|G|684
4V6R|1|BB|A|685
4V6R|1|BB|U|686
4V6R|1|BB|C|687
4V6R|1|BB|U|688
4V6R|1|BB|A|689
*
4V6R|1|BB|U|773
4V6R|1|BB|G|774
4V6R|1|BB|G|775
*
4V6R|1|BB|C|791
4V6R|1|BB|A|792
4V6R|1|BB|A|793
4V6R|1|BB|A|794

Current chains

Chain BB

23S ribomosomal RNA

Nearby chains

Chain B5

50S ribosomal protein L34

Chain BD

50S ribosomal protein L2