J3_4V6R_036

3D structure

PDB id

4V6R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (class 6 of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

11.5 Å

Loop

Sequence

UCACAUCC*GGUA*UUUAAAGUGG

Length

22 nucleotides

Bulged bases

4V6R|1|BB|A|2518

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V6R|1|BB|U|2514
4V6R|1|BB|C|2515
4V6R|1|BB|A|2516
4V6R|1|BB|C|2517
4V6R|1|BB|A|2518
4V6R|1|BB|U|2519
4V6R|1|BB|C|2520
4V6R|1|BB|C|2521
*
4V6R|1|BB|G|2544
4V6R|1|BB|G|2545
4V6R|1|BB|U|2546
4V6R|1|BB|A|2547
*
4V6R|1|BB|U|2561
4V6R|1|BB|U|2562
4V6R|1|BB|U|2563
4V6R|1|BB|A|2564
4V6R|1|BB|A|2565
4V6R|1|BB|A|2566
4V6R|1|BB|G|2567
4V6R|1|BB|U|2568
4V6R|1|BB|G|2569
4V6R|1|BB|G|2570

Current chains

Chain BB

23S ribomosomal RNA

Nearby chains

Chain BE

50S ribosomal protein L3

Chain BL

50S ribosomal protein L13

Chain BM

50S ribosomal protein L14