J3_4V6S_006

3D structure

PDB id

4V6S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (class 3 of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

13.1 Å

Loop

Sequence

GGAUG*CAUUUAAAG*CAC

Length

17 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V6S|1|AB|G|1055
4V6S|1|AB|G|1056
4V6S|1|AB|A|1057
4V6S|1|AB|U|1058
4V6S|1|AB|G|1059
*
4V6S|1|AB|C|1079
4V6S|1|AB|A|1080
4V6S|1|AB|U|1081
4V6S|1|AB|U|1082
4V6S|1|AB|U|1083
4V6S|1|AB|A|1084
4V6S|1|AB|A|1085
4V6S|1|AB|A|1086
4V6S|1|AB|G|1087
*
4V6S|1|AB|C|1102
4V6S|1|AB|A|1103
4V6S|1|AB|C|1104

Current chains

Chain AB

23S ribomosomal RNA

Nearby chains

Chain A7

50S ribosomal protein L36

Chain AH

50S ribosomal protein L6

Chain AJ

50S ribosomal protein L10

Chain AK

50S ribosomal protein L11