J3_4V6S_017

3D structure

PDB id

4V6S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (class 3 of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

13.1 Å

Loop

Sequence

GGUGGA*UAC*GGAAUC

Length

15 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V6S|1|BA|G|941
4V6S|1|BA|G|942
4V6S|1|BA|U|943
4V6S|1|BA|G|944
4V6S|1|BA|G|945
4V6S|1|BA|A|946
*
4V6S|1|BA|U|1235
4V6S|1|BA|A|1236
4V6S|1|BA|C|1237
*
4V6S|1|BA|G|1337
4V6S|1|BA|G|1338
4V6S|1|BA|A|1339
4V6S|1|BA|A|1340
4V6S|1|BA|U|1341
4V6S|1|BA|C|1342

Current chains

Chain BA

16S ribosomal RNA

Nearby chains

Chain BC

Transfer RNA; tRNA

Chain BI

30S ribosomal protein S7

Chain BK

30S ribosomal protein S9

Chain BO

30S ribosomal protein S13