J3_4V6S_035

3D structure

PDB id

4V6S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (class 3 of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

13.1 Å

Loop

Sequence

CUUGACAU*ACAG*CUUACG

Length

18 nucleotides

Bulged bases

4V6S|1|BA|C|1214

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V6S_035 not in the Motif Atlas

Homologous match to J3_5J7L_053

Geometric discrepancy: 0.3033

The information below is about J3_5J7L_053

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76475.2

Basepair signature

cWW-tWH-F-tHS-cWW-cWW-F-cWS-cWS-cWW

Number of instances in this motif group

2

Unit IDs

4V6S|1|BA|C|990
4V6S|1|BA|U|991
4V6S|1|BA|U|992
4V6S|1|BA|G|993
4V6S|1|BA|A|994
4V6S|1|BA|C|995
4V6S|1|BA|A|996
4V6S|1|BA|U|997
*
4V6S|1|BA|A|1044
4V6S|1|BA|C|1045
4V6S|1|BA|A|1046
4V6S|1|BA|G|1047
*
4V6S|1|BA|C|1210
4V6S|1|BA|U|1211
4V6S|1|BA|U|1212
4V6S|1|BA|A|1213
4V6S|1|BA|C|1214
4V6S|1|BA|G|1215

Current chains

Chain BA

16S ribosomal RNA

Nearby chains

Chain BP

30S ribosomal protein S14