3D structure

PDB id
4V6T (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the bacterial ribosome complexed by tmRNA-SmpB and EF-G during translocation and MLD-loading
Experimental method
ELECTRON MICROSCOPY
Resolution
8.3 Å

Loop

Sequence
CGG*CUUG*CG
Length
9 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_4V6T_002 not in the Motif Atlas
Homologous match to J3_5J7L_002
Geometric discrepancy: 0.1321
The information below is about J3_5J7L_002
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_56052.5
Basepair signature
cWW-F-cWW-cWW-F
Number of instances in this motif group
5

Unit IDs

4V6T|1|AA|C|586
4V6T|1|AA|G|587
4V6T|1|AA|G|588
*
4V6T|1|AA|C|651
4V6T|1|AA|U|652
4V6T|1|AA|U|653
4V6T|1|AA|G|654
*
4V6T|1|AA|C|754
4V6T|1|AA|G|755

Current chains

Chain AA
16S ribosomal RNA

Nearby chains

Chain AH
30S ribosomal protein S8
Chain AL
30S ribosomal protein S12
Chain AO
30S ribosomal protein S15
Chain AQ
30S ribosomal protein S17

Coloring options:


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