J3_4V6T_015

3D structure

PDB id

4V6T (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the bacterial ribosome complexed by tmRNA-SmpB and EF-G during translocation and MLD-loading

Experimental method

ELECTRON MICROSCOPY

Resolution

8.3 Å

Loop

Sequence

CAG*CGAAC*GAUG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V6T_015 not in the Motif Atlas

Homologous match to J3_5J7L_039

Geometric discrepancy: 0.0592

The information below is about J3_5J7L_039

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_44724.7

Basepair signature

cWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

6

Unit IDs

4V6T|1|BA|C|698
4V6T|1|BA|A|699
4V6T|1|BA|G|700
*
4V6T|1|BA|C|732
4V6T|1|BA|G|733
4V6T|1|BA|A|734
4V6T|1|BA|A|735
4V6T|1|BA|C|736
*
4V6T|1|BA|G|760
4V6T|1|BA|A|761
4V6T|1|BA|U|762
4V6T|1|BA|G|763

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BC

50S ribosomal protein L2