J3_4V6T_035
3D structure
- PDB id
- 4V6T (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the bacterial ribosome complexed by tmRNA-SmpB and EF-G during translocation and MLD-loading
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 8.3 Å
Loop
- Sequence
- UGAUUCUGGAUUCGACG*CGGACG*CCA
- Length
- 26 nucleotides
- Bulged bases
- 4V6T|1|AV|A|8, 4V6T|1|AV|U|9, 4V6T|1|AV|U|10, 4V6T|1|AV|C|11, 4V6T|1|AV|U|12, 4V6T|1|AV|G|13, 4V6T|1|AV|G|14, 4V6T|1|AV|A|15, 4V6T|1|AV|U|16, 4V6T|1|AV|G|333, 4V6T|1|AV|C|335
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
4V6T|1|AV|U|6
4V6T|1|AV|G|7
4V6T|1|AV|A|8
4V6T|1|AV|U|9
4V6T|1|AV|U|10
4V6T|1|AV|C|11
4V6T|1|AV|U|12
4V6T|1|AV|G|13
4V6T|1|AV|G|14
4V6T|1|AV|A|15
4V6T|1|AV|U|16
4V6T|1|AV|U|17
4V6T|1|AV|C|18
4V6T|1|AV|G|19
4V6T|1|AV|A|20
4V6T|1|AV|C|21
4V6T|1|AV|G|22
*
4V6T|1|AV|C|331
4V6T|1|AV|G|332
4V6T|1|AV|G|333
4V6T|1|AV|A|334
4V6T|1|AV|C|335
4V6T|1|AV|G|336
*
4V6T|1|AV|C|352
4V6T|1|AV|C|353
4V6T|1|AV|A|354
Current chains
- Chain AV
- full length transfer messenger RNA (tmRNA)
Nearby chains
- Chain AW
- SsrA-binding protein
- Chain BF
- 50S ribosomal protein L5
- Chain BM
- 50S ribosomal protein L16
- Chain BW
- 50S ribosomal protein L27
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