3D structure

PDB id
4V6T (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the bacterial ribosome complexed by tmRNA-SmpB and EF-G during translocation and MLD-loading
Experimental method
ELECTRON MICROSCOPY
Resolution
8.3 Å

Loop

Sequence
UGAUUCUGGAUUCGACG*CGGACG*CCA
Length
26 nucleotides
Bulged bases
4V6T|1|AV|A|8, 4V6T|1|AV|U|9, 4V6T|1|AV|U|10, 4V6T|1|AV|C|11, 4V6T|1|AV|U|12, 4V6T|1|AV|G|13, 4V6T|1|AV|G|14, 4V6T|1|AV|A|15, 4V6T|1|AV|U|16, 4V6T|1|AV|G|333, 4V6T|1|AV|C|335
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

4V6T|1|AV|U|6
4V6T|1|AV|G|7
4V6T|1|AV|A|8
4V6T|1|AV|U|9
4V6T|1|AV|U|10
4V6T|1|AV|C|11
4V6T|1|AV|U|12
4V6T|1|AV|G|13
4V6T|1|AV|G|14
4V6T|1|AV|A|15
4V6T|1|AV|U|16
4V6T|1|AV|U|17
4V6T|1|AV|C|18
4V6T|1|AV|G|19
4V6T|1|AV|A|20
4V6T|1|AV|C|21
4V6T|1|AV|G|22
*
4V6T|1|AV|C|331
4V6T|1|AV|G|332
4V6T|1|AV|G|333
4V6T|1|AV|A|334
4V6T|1|AV|C|335
4V6T|1|AV|G|336
*
4V6T|1|AV|C|352
4V6T|1|AV|C|353
4V6T|1|AV|A|354

Current chains

Chain AV
full length transfer messenger RNA (tmRNA)

Nearby chains

Chain AW
SsrA-binding protein
Chain BF
50S ribosomal protein L5
Chain BM
50S ribosomal protein L16
Chain BW
50S ribosomal protein L27

Coloring options:

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