J3_4V6T_041

3D structure

PDB id

4V6T (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the bacterial ribosome complexed by tmRNA-SmpB and EF-G during translocation and MLD-loading

Experimental method

ELECTRON MICROSCOPY

Resolution

8.3 Å

Loop

Sequence

GCA*UCAUAGUGAUCC*GCUCAAC

Length

22 nucleotides

Bulged bases

4V6T|1|BA|A|2388, 4V6T|1|BA|U|2390, 4V6T|1|BA|A|2426

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V6T_041 not in the Motif Atlas

Homologous match to J3_5J7L_070

Geometric discrepancy: 0.0629

The information below is about J3_5J7L_070

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_20992.1

Basepair signature

cWW-F-F-cWW-tHW-tHW-F-cWW-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

4V6T|1|BA|G|2282
4V6T|1|BA|C|2283
4V6T|1|BA|A|2284
*
4V6T|1|BA|U|2384
4V6T|1|BA|C|2385
4V6T|1|BA|A|2386
4V6T|1|BA|U|2387
4V6T|1|BA|A|2388
4V6T|1|BA|G|2389
4V6T|1|BA|U|2390
4V6T|1|BA|G|2391
4V6T|1|BA|A|2392
4V6T|1|BA|U|2393
4V6T|1|BA|C|2394
4V6T|1|BA|C|2395
*
4V6T|1|BA|G|2421
4V6T|1|BA|C|2422
4V6T|1|BA|U|2423
4V6T|1|BA|C|2424
4V6T|1|BA|A|2425
4V6T|1|BA|A|2426
4V6T|1|BA|C|2427

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain AX

Transfer RNA; tRNA

Chain B1

50S ribosomal protein L33

Chain B3

50S ribosomal protein L35

Chain BL

50S ribosomal protein L15

Chain BW

50S ribosomal protein L27