J3_4V6V_005

3D structure

PDB id

4V6V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Tetracycline resistance protein Tet(O) bound to the ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

9.8 Å

Loop

Sequence

CAAG*CUAGUAA*UGAAUACG

Length

19 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V6V_005 not in the Motif Atlas

Homologous match to J3_4LFB_002

Geometric discrepancy: 0.1268

The information below is about J3_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_85722.1

Basepair signature

cWW-F-F-cSS-F-cWW-tHH-tWW-F-tWH-tHS-cSH-cWW

Number of instances in this motif group

5

Unit IDs

4V6V|1|AA|C|936
4V6V|1|AA|A|937
4V6V|1|AA|A|938
4V6V|1|AA|G|939
*
4V6V|1|AA|C|1344
4V6V|1|AA|U|1345
4V6V|1|AA|A|1346
4V6V|1|AA|G|1347
4V6V|1|AA|U|1348
4V6V|1|AA|A|1349
4V6V|1|AA|A|1350
*
4V6V|1|AA|U|1372
4V6V|1|AA|G|1373
4V6V|1|AA|A|1374
4V6V|1|AA|A|1375
4V6V|1|AA|U|1376
4V6V|1|AA|A|1377
4V6V|1|AA|C|1378
4V6V|1|AA|G|1379

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AG

30S ribosomal protein S7

Chain AI

30S ribosomal protein S9