J3_4V6V_017

3D structure

PDB id

4V6V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Tetracycline resistance protein Tet(O) bound to the ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

9.8 Å

Loop

Sequence

UGAUCUA*UGG*CAAA

Length

14 nucleotides

Bulged bases

4V6V|1|BA|U|686

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V6V_017 not in the Motif Atlas

Homologous match to J3_7A0S_004

Geometric discrepancy: 0.1302

The information below is about J3_7A0S_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_64189.2

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

4V6V|1|BA|U|683
4V6V|1|BA|G|684
4V6V|1|BA|A|685
4V6V|1|BA|U|686
4V6V|1|BA|C|687
4V6V|1|BA|U|688
4V6V|1|BA|A|689
*
4V6V|1|BA|U|773
4V6V|1|BA|G|774
4V6V|1|BA|G|775
*
4V6V|1|BA|C|791
4V6V|1|BA|A|792
4V6V|1|BA|A|793
4V6V|1|BA|A|794

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain B7

50S ribosomal protein L34

Chain BD

50S ribosomal protein L2