J3_4V6V_027
3D structure
- PDB id
- 4V6V (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Tetracycline resistance protein Tet(O) bound to the ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 9.8 Å
Loop
- Sequence
- GCCGUAG*CGC*GGAAC
- Length
- 15 nucleotides
- Bulged bases
- 4V6V|1|Ba|A|108
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4V6V_027 not in the Motif Atlas
- Homologous match to J3_5J7L_049
- Geometric discrepancy: 0.4841
- The information below is about J3_5J7L_049
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_89095.1
- Basepair signature
- cWW-F-F-F-tHS-F-cWW-F-cWW
- Number of instances in this motif group
- 1
Unit IDs
4V6V|1|Ba|G|10
4V6V|1|Ba|C|11
4V6V|1|Ba|C|12
4V6V|1|Ba|G|13
4V6V|1|Ba|U|14
4V6V|1|Ba|A|15
4V6V|1|Ba|G|16
*
4V6V|1|Ba|C|68
4V6V|1|Ba|G|69
4V6V|1|Ba|C|70
*
4V6V|1|Ba|G|106
4V6V|1|Ba|G|107
4V6V|1|Ba|A|108
4V6V|1|Ba|A|109
4V6V|1|Ba|C|110
Current chains
- Chain Ba
- 5S ribosomal RNA
Nearby chains
- Chain B0
- 50S ribosomal protein L27
- Chain BA
- Large subunit ribosomal RNA; LSU rRNA
- Chain BS
- 50S ribosomal protein L18
- Chain BZ
- 50S ribosomal protein L25
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