J3_4V6X_001

3D structure

PDB id

4V6X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5 Å

Loop

Sequence

CAGCG*CGUACGG*CCCGG

Length

17 nucleotides

Bulged bases

4V6X|1|A5|C|159

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V6X|1|A5|C|112
4V6X|1|A5|A|113
4V6X|1|A5|G|114
4V6X|1|A5|C|115
4V6X|1|A5|G|116
*
4V6X|1|A5|C|155
4V6X|1|A5|G|156
4V6X|1|A5|U|157
4V6X|1|A5|A|158
4V6X|1|A5|C|159
4V6X|1|A5|G|160
4V6X|1|A5|G|161
*
4V6X|1|A5|C|274
4V6X|1|A5|C|275
4V6X|1|A5|C|276
4V6X|1|A5|G|277
4V6X|1|A5|G|278

Current chains

Chain A5

28S ribosomal RNA

Nearby chains

Chain CG

60S ribosomal protein L7a

Chain CL

60S ribosomal protein L13

Chain CN

60S ribosomal protein L15

Chain Ch

60S ribosomal protein L35

Chain Ci

60S ribosomal protein L36