J3_4V6X_003
3D structure
- PDB id
- 4V6X (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the human 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5 Å
Loop
- Sequence
- ACC*GAGGGAGCGAGACCCGUCG*CGGGGU
- Length
- 28 nucleotides
- Bulged bases
- 4V6X|1|A5|G|965, 4V6X|1|A5|A|966, 4V6X|1|A5|C|967, 4V6X|1|A5|G|970, 4V6X|1|A5|G|1281
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
4V6X|1|A5|A|711
4V6X|1|A5|C|712
4V6X|1|A5|C|713
*
4V6X|1|A5|G|955
4V6X|1|A5|A|956
4V6X|1|A5|G|957
4V6X|1|A5|G|958
4V6X|1|A5|G|959
4V6X|1|A5|A|960
4V6X|1|A5|G|961
4V6X|1|A5|C|962
4V6X|1|A5|G|963
4V6X|1|A5|A|964
4V6X|1|A5|G|965
4V6X|1|A5|A|966
4V6X|1|A5|C|967
4V6X|1|A5|C|968
4V6X|1|A5|C|969
4V6X|1|A5|G|970
4V6X|1|A5|U|971
4V6X|1|A5|C|972
4V6X|1|A5|G|973
*
4V6X|1|A5|C|1280
4V6X|1|A5|G|1281
4V6X|1|A5|G|1282
4V6X|1|A5|G|1283
4V6X|1|A5|G|1284
4V6X|1|A5|U|1285
Current chains
- Chain A5
- 28S ribosomal RNA
Nearby chains
- Chain CC
- 60S ribosomal protein L4
- Chain CE
- 60S ribosomal protein L6
- Chain CF
- 60S ribosomal protein L7
- Chain Ce
- 60S ribosomal protein L32
- Chain Cf
- 60S ribosomal protein L35a
- Chain Cr
- 60S ribosomal protein L28
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