J3_4V6X_014

3D structure

PDB id

4V6X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5 Å

Loop

Sequence

CAU*GCUUCU*AAGG

Length

13 nucleotides

Bulged bases

4V6X|1|A5|C|4990, 4V6X|1|A5|A|5061

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V6X|1|A5|C|4970
4V6X|1|A5|A|4971
4V6X|1|A5|U|4972
*
4V6X|1|A5|G|4986
4V6X|1|A5|C|4987
4V6X|1|A5|U|4988
4V6X|1|A5|U|4989
4V6X|1|A5|C|4990
4V6X|1|A5|U|4991
*
4V6X|1|A5|A|5060
4V6X|1|A5|A|5061
4V6X|1|A5|G|5062
4V6X|1|A5|G|5063

Current chains

Chain A5

28S ribosomal RNA

Nearby chains

Chain CB

60S ribosomal protein L3

Chain CP

60S ribosomal protein L17

Chain Cd

60S ribosomal protein L31