J3_4V6X_019
3D structure
- PDB id
- 4V6X (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the human 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5 Å
Loop
- Sequence
- AUUC*GGACCAGAG*CAUUU
- Length
- 18 nucleotides
- Bulged bases
- 4V6X|1|B2|G|991
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4V6X_019 not in the Motif Atlas
- Homologous match to J3_4V88_033
- Geometric discrepancy: 0.102
- The information below is about J3_4V88_033
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_38616.1
- Basepair signature
- cWW-F-cWW-F-cWW-F-cWW-F-tWW-F-cWW
- Number of instances in this motif group
- 1
Unit IDs
4V6X|1|B2|A|938
4V6X|1|B2|U|939
4V6X|1|B2|U|940
4V6X|1|B2|C|941
*
4V6X|1|B2|G|985
4V6X|1|B2|G|986
4V6X|1|B2|A|987
4V6X|1|B2|C|988
4V6X|1|B2|C|989
4V6X|1|B2|A|990
4V6X|1|B2|G|991
4V6X|1|B2|A|992
4V6X|1|B2|G|993
*
4V6X|1|B2|C|1000
4V6X|1|B2|A|1001
4V6X|1|B2|U|1002
4V6X|1|B2|U|1003
4V6X|1|B2|U|1004
Current chains
- Chain B2
- 18S ribosomal RNA
Nearby chains
- Chain AB
- 40S ribosomal protein S3a
- Chain AN
- 40S ribosomal protein S13
- Chain AO
- 40S ribosomal protein S14
- Chain Aa
- 40S ribosomal protein S26
- Chain Cp
- 60S ribosomal protein L37a
Coloring options: