J3_4V6X_032

3D structure

PDB id

4V6X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5 Å

Loop

Sequence

CAGUC*GUGC*GACG

Length

13 nucleotides

Bulged bases

4V6X|1|A5|A|452, 4V6X|1|A5|G|453, 4V6X|1|A5|U|454

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V6X|1|A5|C|451
4V6X|1|A5|A|452
4V6X|1|A5|G|453
4V6X|1|A5|U|454
4V6X|1|A5|C|455
*
4V6X|1|A5|G|701
4V6X|1|A5|U|702
4V6X|1|A5|G|703
4V6X|1|A5|C|704
*
4V6X|1|A5|G|1293
4V6X|1|A5|A|1294
4V6X|1|A5|C|1295
4V6X|1|A5|G|1296

Current chains

Chain A5

28S ribosomal RNA

Nearby chains

Chain CE

60S ribosomal protein L6

Chain Ce

60S ribosomal protein L32

Chain Cf

60S ribosomal protein L35a

Chain Cr

60S ribosomal protein L28