J3_4V6X_036
3D structure
- PDB id
- 4V6X (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the human 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5 Å
Loop
- Sequence
- GGGGG*UCGCUUCUGGCGCCAAG*CGAC
- Length
- 26 nucleotides
- Bulged bases
- 4V6X|1|A5|C|4116, 4V6X|1|A5|U|4117, 4V6X|1|A5|U|4118, 4V6X|1|A5|C|4119, 4V6X|1|A5|U|4120, 4V6X|1|A5|G|4121
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
4V6X|1|A5|G|4091
4V6X|1|A5|G|4092
4V6X|1|A5|G|4093
4V6X|1|A5|G|4094
4V6X|1|A5|G|4095
*
4V6X|1|A5|U|4113
4V6X|1|A5|C|4114
4V6X|1|A5|G|4115
4V6X|1|A5|C|4116
4V6X|1|A5|U|4117
4V6X|1|A5|U|4118
4V6X|1|A5|C|4119
4V6X|1|A5|U|4120
4V6X|1|A5|G|4121
4V6X|1|A5|G|4122
4V6X|1|A5|C|4123
4V6X|1|A5|G|4124
4V6X|1|A5|C|4125
4V6X|1|A5|C|4126
4V6X|1|A5|A|4127
4V6X|1|A5|A|4128
4V6X|1|A5|G|4129
*
4V6X|1|A5|C|4155
4V6X|1|A5|G|4156
4V6X|1|A5|A|4157
4V6X|1|A5|C|4158
Current chains
- Chain A5
- 28S ribosomal RNA
Nearby chains
- Chain AB
- 40S ribosomal protein S3a
- Chain CA
- 60S ribosomal protein L8
- Chain CG
- 60S ribosomal protein L7a
- Chain CX
- 60S ribosomal protein L23a
- Chain CZ
- 60S ribosomal protein L27
- Chain Cc
- 60S ribosomal protein L30
- Chain Cg
- 60S ribosomal protein L34
- Chain Cp
- 60S ribosomal protein L37a
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