J3_4V6X_038

3D structure

PDB id

4V6X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5 Å

Loop

Sequence

UCGGUUG*CCCUUCGU*ACGCACCGCACGUUCGUGG

Length

34 nucleotides

Bulged bases

4V6X|1|A5|G|4750, 4V6X|1|A5|C|4883, 4V6X|1|A5|C|4937, 4V6X|1|A5|C|4939, 4V6X|1|A5|C|4940, 4V6X|1|A5|G|4945, 4V6X|1|A5|U|4946, 4V6X|1|A5|U|4947

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V6X|1|A5|U|4748
4V6X|1|A5|C|4749
4V6X|1|A5|G|4750
4V6X|1|A5|G|4751
4V6X|1|A5|U|4752
4V6X|1|A5|U|4753
4V6X|1|A5|G|4754
*
4V6X|1|A5|C|4878
4V6X|1|A5|C|4879
4V6X|1|A5|C|4880
4V6X|1|A5|U|4881
4V6X|1|A5|U|4882
4V6X|1|A5|C|4883
4V6X|1|A5|G|4884
4V6X|1|A5|U|4885
*
4V6X|1|A5|A|4934
4V6X|1|A5|C|4935
4V6X|1|A5|G|4936
4V6X|1|A5|C|4937
4V6X|1|A5|A|4938
4V6X|1|A5|C|4939
4V6X|1|A5|C|4940
4V6X|1|A5|G|4941
4V6X|1|A5|C|4942
4V6X|1|A5|A|4943
4V6X|1|A5|C|4944
4V6X|1|A5|G|4945
4V6X|1|A5|U|4946
4V6X|1|A5|U|4947
4V6X|1|A5|C|4948
4V6X|1|A5|G|4949
4V6X|1|A5|U|4950
4V6X|1|A5|G|4951
4V6X|1|A5|G|4952

Current chains

Chain A5

28S ribosomal RNA

Nearby chains

Chain CE

60S ribosomal protein L6

Chain CM

60S ribosomal protein L14

Chain CO

60S ribosomal protein L13a

Chain CS

60S ribosomal protein L18a

Chain Cf

60S ribosomal protein L35a