J3_4V6X_041

3D structure

PDB id

4V6X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5 Å

Loop

Sequence

CAGAUCAAAACCAACC*GCUUUG*CUAG

Length

26 nucleotides

Bulged bases

4V6X|1|B2|U|227, 4V6X|1|B2|C|228, 4V6X|1|B2|C|284, 4V6X|1|B2|U|285, 4V6X|1|B2|U|286

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V6X|1|B2|C|223
4V6X|1|B2|A|224
4V6X|1|B2|G|225
4V6X|1|B2|A|226
4V6X|1|B2|U|227
4V6X|1|B2|C|228
4V6X|1|B2|A|229
4V6X|1|B2|A|230
4V6X|1|B2|A|231
4V6X|1|B2|A|232
4V6X|1|B2|C|233
4V6X|1|B2|C|234
4V6X|1|B2|A|235
4V6X|1|B2|A|236
4V6X|1|B2|C|237
4V6X|1|B2|C|238
*
4V6X|1|B2|G|283
4V6X|1|B2|C|284
4V6X|1|B2|U|285
4V6X|1|B2|U|286
4V6X|1|B2|U|287
4V6X|1|B2|G|288
*
4V6X|1|B2|C|295
4V6X|1|B2|U|296
4V6X|1|B2|A|297
4V6X|1|B2|G|298

Current chains

Chain B2

18S ribosomal RNA

Nearby chains

Chain AE

40S ribosomal protein S4, X isoform

Chain AG

40S ribosomal protein S6

Chain AI

40S ribosomal protein S8

Chain AL

40S ribosomal protein S11