J3_4V6X_042

3D structure

PDB id

4V6X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5 Å

Loop

Sequence

AGAG*CAG*CUGGAU

Length

13 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V6X_042 not in the Motif Atlas

Homologous match to J3_8P9A_073

Geometric discrepancy: 0.1842

The information below is about J3_8P9A_073

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_97642.2

Basepair signature

cWW-tSH-F-F-cWW-F-tWW-cWW

Number of instances in this motif group

3

Unit IDs

4V6X|1|B2|A|816
4V6X|1|B2|G|817
4V6X|1|B2|A|818
4V6X|1|B2|G|819
*
4V6X|1|B2|C|829
4V6X|1|B2|A|830
4V6X|1|B2|G|831
*
4V6X|1|B2|C|843
4V6X|1|B2|U|844
4V6X|1|B2|G|845
4V6X|1|B2|G|846
4V6X|1|B2|A|847
4V6X|1|B2|U|848

Current chains

Chain B2

18S ribosomal RNA

Nearby chains

Chain AE

40S ribosomal protein S4, X isoform

Chain AJ

40S ribosomal protein S9

Chain AY

40S ribosomal protein S24