J3_4V72_022

3D structure

PDB id

4V72 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in hybrid pre-translocation state (pre4)

Experimental method

ELECTRON MICROSCOPY

Resolution

13 Å

Loop

Sequence

CUAAU*AGGUUAG*CAUAAG

Length

18 nucleotides

Bulged bases

4V72|1|BA|U|2334, 4V72|1|BA|A|2336

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V72_022 not in the Motif Atlas

Homologous match to J3_5J7L_071

Geometric discrepancy: 0.4288

The information below is about J3_5J7L_071

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_44961.1

Basepair signature

cWW-tSH-F-cWW-F-tHW-cWW-tWW-cWW-F

Number of instances in this motif group

1

Unit IDs

4V72|1|BA|C|2295
4V72|1|BA|U|2296
4V72|1|BA|A|2297
4V72|1|BA|A|2298
4V72|1|BA|U|2299
*
4V72|1|BA|A|2317
4V72|1|BA|G|2318
4V72|1|BA|G|2319
4V72|1|BA|U|2320
4V72|1|BA|U|2321
4V72|1|BA|A|2322
4V72|1|BA|G|2323
*
4V72|1|BA|C|2332
4V72|1|BA|A|2333
4V72|1|BA|U|2334
4V72|1|BA|A|2335
4V72|1|BA|A|2336
4V72|1|BA|G|2337

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BB

5S ribosomal RNA; 5S rRNA

Chain BF

50S ribosomal protein L5

Chain BO

50S ribosomal protein L18

Chain BW

50S ribosomal protein L27