J3_4V72_036

3D structure

PDB id

4V72 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in hybrid pre-translocation state (pre4)

Experimental method

ELECTRON MICROSCOPY

Resolution

13 Å

Loop

Sequence

GCA*UCAUAGUGAUCC*GCUCAAC

Length

22 nucleotides

Bulged bases

4V72|1|BA|A|2388, 4V72|1|BA|A|2426

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V72_036 not in the Motif Atlas

Homologous match to J3_9DFE_015

Geometric discrepancy: 0.1828

The information below is about J3_9DFE_015

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_20992.1

Basepair signature

cWW-F-F-cWW-tHW-tHW-F-cWW-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

4V72|1|BA|G|2282
4V72|1|BA|C|2283
4V72|1|BA|A|2284
*
4V72|1|BA|U|2384
4V72|1|BA|C|2385
4V72|1|BA|A|2386
4V72|1|BA|U|2387
4V72|1|BA|A|2388
4V72|1|BA|G|2389
4V72|1|BA|U|2390
4V72|1|BA|G|2391
4V72|1|BA|A|2392
4V72|1|BA|U|2393
4V72|1|BA|C|2394
4V72|1|BA|C|2395
*
4V72|1|BA|G|2421
4V72|1|BA|C|2422
4V72|1|BA|U|2423
4V72|1|BA|C|2424
4V72|1|BA|A|2425
4V72|1|BA|A|2426
4V72|1|BA|C|2427

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain A3

Transfer RNA; tRNA

Chain B1

50S ribosomal protein L33

Chain B3

50S ribosomal protein L35

Chain BL

50S ribosomal protein L15

Chain BW

50S ribosomal protein L27