3D structure

PDB id
4V77 (explore in PDB, NAKB, or RNA 3D Hub)
Description
E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in intermediate post-translocation state (post2b)
Experimental method
ELECTRON MICROSCOPY
Resolution
17 Å

Loop

Sequence
CUAAU*AGGUUAG*CAUAAG
Length
18 nucleotides
Bulged bases
4V77|1|BA|U|2321, 4V77|1|BA|U|2334, 4V77|1|BA|A|2336
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_4V77_021 not in the Motif Atlas
Homologous match to J3_5J7L_071
Geometric discrepancy: 0.4402
The information below is about J3_5J7L_071
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_44961.1
Basepair signature
cWW-tSH-F-cWW-F-tHW-cWW-tWW-cWW-F
Number of instances in this motif group
1

Unit IDs

4V77|1|BA|C|2295
4V77|1|BA|U|2296
4V77|1|BA|A|2297
4V77|1|BA|A|2298
4V77|1|BA|U|2299
*
4V77|1|BA|A|2317
4V77|1|BA|G|2318
4V77|1|BA|G|2319
4V77|1|BA|U|2320
4V77|1|BA|U|2321
4V77|1|BA|A|2322
4V77|1|BA|G|2323
*
4V77|1|BA|C|2332
4V77|1|BA|A|2333
4V77|1|BA|U|2334
4V77|1|BA|A|2335
4V77|1|BA|A|2336
4V77|1|BA|G|2337

Current chains

Chain BA
23S ribosomal RNA

Nearby chains

Chain A1
Transfer RNA; tRNA
Chain BB
5S ribosomal RNA; 5S rRNA
Chain BF
50S ribosomal protein L5
Chain BO
50S ribosomal protein L18
Chain BW
50S ribosomal protein L27

Coloring options:


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