3D structure

PDB id
4V79 (explore in PDB, NAKB, or RNA 3D Hub)
Description
E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in intermediate post-translocation state (post3b)
Experimental method
ELECTRON MICROSCOPY
Resolution
15 Å

Loop

Sequence
UUUAAUUC*GAAGAACCUUAC*GGCUA
Length
25 nucleotides
Bulged bases
4V79|1|AA|A|974, 4V79|1|AA|A|975, 4V79|1|AA|U|1224
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_4V79_005 not in the Motif Atlas
Homologous match to J3_4LFB_004
Geometric discrepancy: 0.4412
The information below is about J3_4LFB_004
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_83516.4
Basepair signature
cWW-tWW-F-F-F-F-F-tSS-cWW-F-F-cWW-F-F-F-F-F-F
Number of instances in this motif group
4

Unit IDs

4V79|1|AA|U|955
4V79|1|AA|U|956
4V79|1|AA|U|957
4V79|1|AA|A|958
4V79|1|AA|A|959
4V79|1|AA|U|960
4V79|1|AA|U|961
4V79|1|AA|C|962
*
4V79|1|AA|G|973
4V79|1|AA|A|974
4V79|1|AA|A|975
4V79|1|AA|G|976
4V79|1|AA|A|977
4V79|1|AA|A|978
4V79|1|AA|C|979
4V79|1|AA|C|980
4V79|1|AA|U|981
4V79|1|AA|U|982
4V79|1|AA|A|983
4V79|1|AA|C|984
*
4V79|1|AA|G|1221
4V79|1|AA|G|1222
4V79|1|AA|C|1223
4V79|1|AA|U|1224
4V79|1|AA|A|1225

Current chains

Chain AA
16S ribosomal RNA

Nearby chains

Chain AJ
30S ribosomal protein S10
Chain AM
30S ribosomal protein S13
Chain AN
30S ribosomal protein S14
Chain AS
30S ribosomal protein S19

Coloring options:


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