3D structure

PDB id
4V7B (explore in PDB, NAKB, or RNA 3D Hub)
Description
Visualization of two tRNAs trapped in transit during EF-G-mediated translocation
Experimental method
ELECTRON MICROSCOPY
Resolution
6.8 Å

Loop

Sequence
CUUG*CAG*CUUACG
Length
13 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_4V7B_005 not in the Motif Atlas
Homologous match to J3_5J7L_007
Geometric discrepancy: 0.1147
The information below is about J3_5J7L_007
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_82572.1
Basepair signature
cWW-tSH-tWW-F-cWW-tHW-F-F-cWW
Number of instances in this motif group
2

Unit IDs

4V7B|1|AA|C|990
4V7B|1|AA|U|991
4V7B|1|AA|U|992
4V7B|1|AA|G|993
*
4V7B|1|AA|C|1045
4V7B|1|AA|A|1046
4V7B|1|AA|G|1047
*
4V7B|1|AA|C|1210
4V7B|1|AA|U|1211
4V7B|1|AA|U|1212
4V7B|1|AA|A|1213
4V7B|1|AA|C|1214
4V7B|1|AA|G|1215

Current chains

Chain AA
16S ribosomal RNA

Nearby chains

Chain AN
30S ribosomal protein S14
Chain AY
Elongation Factor G

Coloring options:


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