J3_4V7B_019

3D structure

PDB id

4V7B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Visualization of two tRNAs trapped in transit during EF-G-mediated translocation

Experimental method

ELECTRON MICROSCOPY

Resolution

6.8 Å

Loop

Sequence

GCCGUAG*CGC*GGAAC

Length

15 nucleotides

Bulged bases

4V7B|1|BB|U|14, 4V7B|1|BB|A|108

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V7B_019 not in the Motif Atlas

Homologous match to J3_5J7L_049

Geometric discrepancy: 0.1391

The information below is about J3_5J7L_049

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_89095.1

Basepair signature

cWW-F-F-F-tHS-F-cWW-F-cWW

Number of instances in this motif group

1

Unit IDs

4V7B|1|BB|G|10
4V7B|1|BB|C|11
4V7B|1|BB|C|12
4V7B|1|BB|G|13
4V7B|1|BB|U|14
4V7B|1|BB|A|15
4V7B|1|BB|G|16
*
4V7B|1|BB|C|68
4V7B|1|BB|G|69
4V7B|1|BB|C|70
*
4V7B|1|BB|G|106
4V7B|1|BB|G|107
4V7B|1|BB|A|108
4V7B|1|BB|A|109
4V7B|1|BB|C|110

Current chains

Chain BB

5S ribosomal RNA

Nearby chains

Chain BA

Large subunit ribosomal RNA; LSU rRNA

Chain BO

50S ribosomal protein L18

Chain BW

50S ribosomal protein L27