J3_4V7B_025

3D structure

PDB id

4V7B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Visualization of two tRNAs trapped in transit during EF-G-mediated translocation

Experimental method

ELECTRON MICROSCOPY

Resolution

6.8 Å

Loop

Sequence

CUUGACAU*ACAG*CUUACG

Length

18 nucleotides

Bulged bases

4V7B|1|AA|U|1212, 4V7B|1|AA|C|1214

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V7B_025 not in the Motif Atlas

Homologous match to J3_5J7L_053

Geometric discrepancy: 0.1046

The information below is about J3_5J7L_053

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76475.2

Basepair signature

cWW-tWH-F-tHS-cWW-cWW-F-cWS-cWS-cWW

Number of instances in this motif group

2

Unit IDs

4V7B|1|AA|C|990
4V7B|1|AA|U|991
4V7B|1|AA|U|992
4V7B|1|AA|G|993
4V7B|1|AA|A|994
4V7B|1|AA|C|995
4V7B|1|AA|A|996
4V7B|1|AA|U|997
*
4V7B|1|AA|A|1044
4V7B|1|AA|C|1045
4V7B|1|AA|A|1046
4V7B|1|AA|G|1047
*
4V7B|1|AA|C|1210
4V7B|1|AA|U|1211
4V7B|1|AA|U|1212
4V7B|1|AA|A|1213
4V7B|1|AA|C|1214
4V7B|1|AA|G|1215

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AN

30S ribosomal protein S14

Chain AY

Elongation Factor G