J3_4V7B_032

3D structure

PDB id

4V7B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Visualization of two tRNAs trapped in transit during EF-G-mediated translocation

Experimental method

ELECTRON MICROSCOPY

Resolution

6.8 Å

Loop

Sequence

GGAAG*CGCGAUACAG*CGUAC

Length

20 nucleotides

Bulged bases

4V7B|1|BA|U|321

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V7B_032 not in the Motif Atlas

Homologous match to J3_5J7L_068

Geometric discrepancy: 0.065

The information below is about J3_5J7L_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46299.2

Basepair signature

cWW-F-F-F-cHH-cWW-tHS-F-cWW-cSW-tHS-cWW

Number of instances in this motif group

3

Unit IDs

4V7B|1|BA|G|297
4V7B|1|BA|G|298
4V7B|1|BA|A|299
4V7B|1|BA|A|300
4V7B|1|BA|G|301
*
4V7B|1|BA|C|316
4V7B|1|BA|G|317
4V7B|1|BA|C|318
4V7B|1|BA|G|319
4V7B|1|BA|A|320
4V7B|1|BA|U|321
4V7B|1|BA|A|322
4V7B|1|BA|C|323
4V7B|1|BA|A|324
4V7B|1|BA|G|325
*
4V7B|1|BA|C|337
4V7B|1|BA|G|338
4V7B|1|BA|U|339
4V7B|1|BA|A|340
4V7B|1|BA|C|341

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BE

50S ribosomal protein L4

Chain BU

50S ribosomal protein L24