J3_4V7E_009

3D structure

PDB id

4V7E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Model of the small subunit RNA based on a 5.5 A cryo-EM map of Triticum aestivum translating 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5.5 Å

Loop

Sequence

CUUUG*CUUAUU*AAGACAUUG

Length

20 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V7E|1|Aa|C|2430
4V7E|1|Aa|U|2431
4V7E|1|Aa|U|2432
4V7E|1|Aa|U|2433
4V7E|1|Aa|G|2434
*
4V7E|1|Aa|C|2515
4V7E|1|Aa|U|2516
4V7E|1|Aa|U|2517
4V7E|1|Aa|A|2518
4V7E|1|Aa|U|2519
4V7E|1|Aa|U|2520
*
4V7E|1|Aa|A|2593
4V7E|1|Aa|A|2594
4V7E|1|Aa|G|2595
4V7E|1|Aa|A|2596
4V7E|1|Aa|C|2597
4V7E|1|Aa|A|2598
4V7E|1|Aa|U|2599
4V7E|1|Aa|U|2600
4V7E|1|Aa|G|2601

Current chains

Chain Aa

60S ribosomal RNA

Nearby chains

Chain CA

60S ribosomal protein L2

Chain CG

60S ribosomal protein L8E

Chain CN

60S ribosomal protein L15E

Chain Ci

60S ribosomal protein L36E