J3_4V7E_010

3D structure

PDB id

4V7E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Model of the small subunit RNA based on a 5.5 A cryo-EM map of Triticum aestivum translating 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5.5 Å

Loop

Sequence

CUCAA*UGUGGAA*UAAAAG

Length

18 nucleotides

Bulged bases

4V7E|1|Aa|A|2706, 4V7E|1|Aa|A|2708

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V7E|1|Aa|C|2667
4V7E|1|Aa|U|2668
4V7E|1|Aa|C|2669
4V7E|1|Aa|A|2670
4V7E|1|Aa|A|2671
*
4V7E|1|Aa|U|2689
4V7E|1|Aa|G|2690
4V7E|1|Aa|U|2691
4V7E|1|Aa|G|2692
4V7E|1|Aa|G|2693
4V7E|1|Aa|A|2694
4V7E|1|Aa|A|2695
*
4V7E|1|Aa|U|2704
4V7E|1|Aa|A|2705
4V7E|1|Aa|A|2706
4V7E|1|Aa|A|2707
4V7E|1|Aa|A|2708
4V7E|1|Aa|G|2709

Current chains

Chain Aa

60S ribosomal RNA

Nearby chains

Chain Ab

5S ribosomal RNA; 5S rRNA

Chain Ae

Transfer RNA; tRNA

Chain CD

60S ribosomal protein L18

Chain CJ

60S ribosomal protein L5

Chain CT

60S ribosomal protein L21E