J3_4V7E_013
3D structure
- PDB id
- 4V7E (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Model of the small subunit RNA based on a 5.5 A cryo-EM map of Triticum aestivum translating 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.5 Å
Loop
- Sequence
- AUUC*GAACAACUG*CAUUU
- Length
- 18 nucleotides
- Bulged bases
- 4V7E|1|Ad|C|939
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4V7E_013 not in the Motif Atlas
- Homologous match to J3_4V88_033
- Geometric discrepancy: 0.1685
- The information below is about J3_4V88_033
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_38616.1
- Basepair signature
- cWW-F-cWW-F-cWW-F-cWW-F-tWW-F-cWW
- Number of instances in this motif group
- 1
Unit IDs
4V7E|1|Ad|A|886
4V7E|1|Ad|U|887
4V7E|1|Ad|U|888
4V7E|1|Ad|C|889
*
4V7E|1|Ad|G|933
4V7E|1|Ad|A|934
4V7E|1|Ad|A|935
4V7E|1|Ad|C|936
4V7E|1|Ad|A|937
4V7E|1|Ad|A|938
4V7E|1|Ad|C|939
4V7E|1|Ad|U|940
4V7E|1|Ad|G|941
*
4V7E|1|Ad|C|948
4V7E|1|Ad|A|949
4V7E|1|Ad|U|950
4V7E|1|Ad|U|951
4V7E|1|Ad|U|952
Current chains
- Chain Ad
- 18S ribosomal RNA
Nearby chains
- Chain BB
- 40S ribosomal protein S1E
- Chain BN
- 40S ribosomal protein S15
- Chain BO
- 40S ribosomal protein S11
- Chain Ba
- 40S ribosomal protein S26E
- Chain CA
- 60S ribosomal protein L2
- Chain Cc
- 60S ribosomal protein L30E
- Chain Cp
- 60S ribosomal protein L43E
Coloring options: