J3_4V7E_015

3D structure

PDB id

4V7E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Model of the small subunit RNA based on a 5.5 A cryo-EM map of Triticum aestivum translating 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5.5 Å

Loop

Sequence

CCAG*CUAGUAAG*UUGACUACG

Length

21 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V7E|1|Ad|C|1166
4V7E|1|Ad|C|1167
4V7E|1|Ad|A|1168
4V7E|1|Ad|G|1169
*
4V7E|1|Ad|C|1589
4V7E|1|Ad|U|1590
4V7E|1|Ad|A|1591
4V7E|1|Ad|G|1592
4V7E|1|Ad|U|1593
4V7E|1|Ad|A|1594
4V7E|1|Ad|A|1595
4V7E|1|Ad|G|1596
*
4V7E|1|Ad|U|1616
4V7E|1|Ad|U|1617
4V7E|1|Ad|G|1618
4V7E|1|Ad|A|1619
4V7E|1|Ad|C|1620
4V7E|1|Ad|U|1621
4V7E|1|Ad|A|1622
4V7E|1|Ad|C|1623
4V7E|1|Ad|G|1624

Current chains

Chain Ad

18S ribosomal RNA

Nearby chains

Chain BF

40S ribosomal protein S7

Chain BQ

40S ribosomal protein S9

Chain Bc

40S ribosomal protein S28E