J3_4V7E_026

3D structure

PDB id

4V7E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Model of the small subunit RNA based on a 5.5 A cryo-EM map of Triticum aestivum translating 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5.5 Å

Loop

Sequence

CGGCGAUG*UGGACUGUU*AACGCCCUGCGG

Length

29 nucleotides

Bulged bases

4V7E|1|Aa|G|438, 4V7E|1|Aa|A|439

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V7E|1|Aa|C|434
4V7E|1|Aa|G|435
4V7E|1|Aa|G|436
4V7E|1|Aa|C|437
4V7E|1|Aa|G|438
4V7E|1|Aa|A|439
4V7E|1|Aa|U|440
4V7E|1|Aa|G|441
*
4V7E|1|Aa|U|496
4V7E|1|Aa|G|497
4V7E|1|Aa|G|498
4V7E|1|Aa|A|499
4V7E|1|Aa|C|500
4V7E|1|Aa|U|501
4V7E|1|Aa|G|502
4V7E|1|Aa|U|503
4V7E|1|Aa|U|504
*
4V7E|1|Aa|A|615
4V7E|1|Aa|A|616
4V7E|1|Aa|C|617
4V7E|1|Aa|G|618
4V7E|1|Aa|C|619
4V7E|1|Aa|C|620
4V7E|1|Aa|C|621
4V7E|1|Aa|U|622
4V7E|1|Aa|G|623
4V7E|1|Aa|C|624
4V7E|1|Aa|G|625
4V7E|1|Aa|G|626

Current chains

Chain Aa

60S ribosomal RNA

Nearby chains

Chain CE

60S ribosomal protein L6E

Chain Ce

60S ribosomal protein L32E

Chain Cf

60S ribosomal protein L33E