J3_4V7E_031
3D structure
- PDB id
- 4V7E (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Model of the small subunit RNA based on a 5.5 A cryo-EM map of Triticum aestivum translating 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.5 Å
Loop
- Sequence
- GGAAGG*CGGCAGAUAGC*GCAUCCC
- Length
- 24 nucleotides
- Bulged bases
- 4V7E|1|Aa|A|1558, 4V7E|1|Aa|G|1559, 4V7E|1|Aa|A|1560, 4V7E|1|Aa|U|1561, 4V7E|1|Aa|A|1562
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
4V7E|1|Aa|G|1540
4V7E|1|Aa|G|1541
4V7E|1|Aa|A|1542
4V7E|1|Aa|A|1543
4V7E|1|Aa|G|1544
4V7E|1|Aa|G|1545
*
4V7E|1|Aa|C|1554
4V7E|1|Aa|G|1555
4V7E|1|Aa|G|1556
4V7E|1|Aa|C|1557
4V7E|1|Aa|A|1558
4V7E|1|Aa|G|1559
4V7E|1|Aa|A|1560
4V7E|1|Aa|U|1561
4V7E|1|Aa|A|1562
4V7E|1|Aa|G|1563
4V7E|1|Aa|C|1564
*
4V7E|1|Aa|G|1575
4V7E|1|Aa|C|1576
4V7E|1|Aa|A|1577
4V7E|1|Aa|U|1578
4V7E|1|Aa|C|1579
4V7E|1|Aa|C|1580
4V7E|1|Aa|C|1581
Current chains
- Chain Aa
- 60S ribosomal RNA
Nearby chains
- Chain Ac
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain CA
- 60S ribosomal protein L2
- Chain CG
- 60S ribosomal protein L8E
- Chain CN
- 60S ribosomal protein L15E
- Chain CX
- 60S ribosomal protein L23
- Chain Cj
- 60S ribosomal protein L37E
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