J3_4V7E_033
3D structure
- PDB id
- 4V7E (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Model of the small subunit RNA based on a 5.5 A cryo-EM map of Triticum aestivum translating 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.5 Å
Loop
- Sequence
- AAGCG*UUUUGGCUCCAAGGCCCG*CGAU
- Length
- 27 nucleotides
- Bulged bases
- 4V7E|1|Aa|U|2554, 4V7E|1|Aa|C|2559, 4V7E|1|Aa|G|2563, 4V7E|1|Aa|G|2564, 4V7E|1|Aa|C|2565
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
4V7E|1|Aa|A|2532
4V7E|1|Aa|A|2533
4V7E|1|Aa|G|2534
4V7E|1|Aa|C|2535
4V7E|1|Aa|G|2536
*
4V7E|1|Aa|U|2551
4V7E|1|Aa|U|2552
4V7E|1|Aa|U|2553
4V7E|1|Aa|U|2554
4V7E|1|Aa|G|2555
4V7E|1|Aa|G|2556
4V7E|1|Aa|C|2557
4V7E|1|Aa|U|2558
4V7E|1|Aa|C|2559
4V7E|1|Aa|C|2560
4V7E|1|Aa|A|2561
4V7E|1|Aa|A|2562
4V7E|1|Aa|G|2563
4V7E|1|Aa|G|2564
4V7E|1|Aa|C|2565
4V7E|1|Aa|C|2566
4V7E|1|Aa|C|2567
4V7E|1|Aa|G|2568
*
4V7E|1|Aa|C|2581
4V7E|1|Aa|G|2582
4V7E|1|Aa|A|2583
4V7E|1|Aa|U|2584
Current chains
- Chain Aa
- 60S ribosomal RNA
Nearby chains
- Chain CA
- 60S ribosomal protein L2
- Chain CG
- 60S ribosomal protein L8E
- Chain CX
- 60S ribosomal protein L23
- Chain CZ
- 60S ribosomal protein L27E
- Chain Cc
- 60S ribosomal protein L30E
- Chain Cg
- 60S ribosomal protein L34E
- Chain Cp
- 60S ribosomal protein L43E
Coloring options: