J3_4V7E_036

3D structure

PDB id

4V7E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Model of the small subunit RNA based on a 5.5 A cryo-EM map of Triticum aestivum translating 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5.5 Å

Loop

Sequence

CGCCCCGAC*GCCCGUGCCAUUG*CUCGAAGCUCCCUUCCCAACG

Length

43 nucleotides

Bulged bases

4V7E|1|Aa|C|3170, 4V7E|1|Aa|C|3171, 4V7E|1|Aa|G|3208, 4V7E|1|Aa|U|3209, 4V7E|1|Aa|C|3212, 4V7E|1|Aa|G|3260, 4V7E|1|Aa|C|3261, 4V7E|1|Aa|U|3262, 4V7E|1|Aa|C|3263, 4V7E|1|Aa|C|3264, 4V7E|1|Aa|U|3267, 4V7E|1|Aa|C|3268, 4V7E|1|Aa|C|3269

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V7E|1|Aa|C|3166
4V7E|1|Aa|G|3167
4V7E|1|Aa|C|3168
4V7E|1|Aa|C|3169
4V7E|1|Aa|C|3170
4V7E|1|Aa|C|3171
4V7E|1|Aa|G|3172
4V7E|1|Aa|A|3173
4V7E|1|Aa|C|3174
*
4V7E|1|Aa|G|3204
4V7E|1|Aa|C|3205
4V7E|1|Aa|C|3206
4V7E|1|Aa|C|3207
4V7E|1|Aa|G|3208
4V7E|1|Aa|U|3209
4V7E|1|Aa|G|3210
4V7E|1|Aa|C|3211
4V7E|1|Aa|C|3212
4V7E|1|Aa|A|3213
4V7E|1|Aa|U|3214
4V7E|1|Aa|U|3215
4V7E|1|Aa|G|3216
*
4V7E|1|Aa|C|3254
4V7E|1|Aa|U|3255
4V7E|1|Aa|C|3256
4V7E|1|Aa|G|3257
4V7E|1|Aa|A|3258
4V7E|1|Aa|A|3259
4V7E|1|Aa|G|3260
4V7E|1|Aa|C|3261
4V7E|1|Aa|U|3262
4V7E|1|Aa|C|3263
4V7E|1|Aa|C|3264
4V7E|1|Aa|C|3265
4V7E|1|Aa|U|3266
4V7E|1|Aa|U|3267
4V7E|1|Aa|C|3268
4V7E|1|Aa|C|3269
4V7E|1|Aa|C|3270
4V7E|1|Aa|A|3271
4V7E|1|Aa|A|3272
4V7E|1|Aa|C|3273
4V7E|1|Aa|G|3274

Current chains

Chain Aa

60S ribosomal RNA

Nearby chains

Chain CE

60S ribosomal protein L6E

Chain CM

60S ribosomal protein L14E

Chain CO

60S ribosomal protein L13

Chain Cf

60S ribosomal protein L33E