J3_4V7E_037

3D structure

PDB id

4V7E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Model of the small subunit RNA based on a 5.5 A cryo-EM map of Triticum aestivum translating 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5.5 Å

Loop

Sequence

UCCU*AAAUACGCGAC*GCGUCGCACGGA

Length

27 nucleotides

Bulged bases

4V7E|1|Aa|C|3311, 4V7E|1|Aa|C|3381, 4V7E|1|Aa|A|3382

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V7E|1|Aa|U|3289
4V7E|1|Aa|C|3290
4V7E|1|Aa|C|3291
4V7E|1|Aa|U|3292
*
4V7E|1|Aa|A|3306
4V7E|1|Aa|A|3307
4V7E|1|Aa|A|3308
4V7E|1|Aa|U|3309
4V7E|1|Aa|A|3310
4V7E|1|Aa|C|3311
4V7E|1|Aa|G|3312
4V7E|1|Aa|C|3313
4V7E|1|Aa|G|3314
4V7E|1|Aa|A|3315
4V7E|1|Aa|C|3316
*
4V7E|1|Aa|G|3375
4V7E|1|Aa|C|3376
4V7E|1|Aa|G|3377
4V7E|1|Aa|U|3378
4V7E|1|Aa|C|3379
4V7E|1|Aa|G|3380
4V7E|1|Aa|C|3381
4V7E|1|Aa|A|3382
4V7E|1|Aa|C|3383
4V7E|1|Aa|G|3384
4V7E|1|Aa|G|3385
4V7E|1|Aa|A|3386

Current chains

Chain Aa

60S ribosomal RNA

Nearby chains

Chain CB

60S ribosomal protein L3

Chain CP

60S ribosomal protein L22

Chain Cd

60S ribosomal protein L31E