J3_4V7E_038
3D structure
- PDB id
- 4V7E (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Model of the small subunit RNA based on a 5.5 A cryo-EM map of Triticum aestivum translating 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.5 Å
Loop
- Sequence
- UCAUAC*GG*UG
- Length
- 10 nucleotides
- Bulged bases
- 4V7E|1|Ab|A|11, 4V7E|1|Ab|U|12
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4V7E_038 not in the Motif Atlas
- Homologous match to J3_8C3A_059
- Geometric discrepancy: 0.2016
- The information below is about J3_8C3A_059
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_12003.1
- Basepair signature
- cWW-F-cWW-tSS-F-cWW
- Number of instances in this motif group
- 4
Unit IDs
4V7E|1|Ab|U|9
4V7E|1|Ab|C|10
4V7E|1|Ab|A|11
4V7E|1|Ab|U|12
4V7E|1|Ab|A|13
4V7E|1|Ab|C|14
*
4V7E|1|Ab|G|65
4V7E|1|Ab|G|66
*
4V7E|1|Ab|U|109
4V7E|1|Ab|G|110
Current chains
- Chain Ab
- 5S ribosomal RNA
Nearby chains
- Chain Aa
- Large subunit ribosomal RNA; LSU rRNA
- Chain CD
- 60S ribosomal protein L18
- Chain CJ
- 60S ribosomal protein L5
- Chain CT
- 60S ribosomal protein L21E
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