J3_4V7E_042

3D structure

PDB id

4V7E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Model of the small subunit RNA based on a 5.5 A cryo-EM map of Triticum aestivum translating 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5.5 Å

Loop

Sequence

AGAG*CAAG*UCUGGAU

Length

15 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V7E|1|Ad|A|766
4V7E|1|Ad|G|767
4V7E|1|Ad|A|768
4V7E|1|Ad|G|769
*
4V7E|1|Ad|C|779
4V7E|1|Ad|A|780
4V7E|1|Ad|A|781
4V7E|1|Ad|G|782
*
4V7E|1|Ad|U|790
4V7E|1|Ad|C|791
4V7E|1|Ad|U|792
4V7E|1|Ad|G|793
4V7E|1|Ad|G|794
4V7E|1|Ad|A|795
4V7E|1|Ad|U|796

Current chains

Chain Ad

18S ribosomal RNA

Nearby chains

Chain BE

40S ribosomal protein S4E

Chain BJ

40S ribosomal protein S4

Chain BY

40S ribosomal protein S24E